tRNA protein (Clostridium botulinum A ATCC 3502)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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co-expression

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[Homology]

Score

tRNA

5S ribosomal RNA; Cove score 85.71. (247 aa)

Predicted Functional Partners:

CBO2331

0.584

nifJ1

0.572

nifJ2

0.526

ppiB

0.521

CBO0032

0.510

rpoB

0.493

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBO0032	nifJ1	CBO0032	CBO1192	Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	0.473
CBO0032	nifJ2	CBO0032	CBO2760	Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	0.473
CBO0032	tRNA	CBO0032	CBO0047	Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	5S ribosomal RNA; Cove score 85.71.	0.510
CBO2331	tRNA	CBO2331	CBO0047	Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.	5S ribosomal RNA; Cove score 85.71.	0.584
nifJ1	CBO0032	CBO1192	CBO0032	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.473
nifJ1	nifJ2	CBO1192	CBO2760	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	0.999
nifJ1	ppiB	CBO1192	CBO3561	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.507
nifJ1	rpoB	CBO1192	CBO3488	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.591
nifJ1	tRNA	CBO1192	CBO0047	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	5S ribosomal RNA; Cove score 85.71.	0.572
nifJ2	CBO0032	CBO2760	CBO0032	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.473
nifJ2	nifJ1	CBO2760	CBO1192	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	0.999
nifJ2	ppiB	CBO2760	CBO3561	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.426
nifJ2	rpoB	CBO2760	CBO3488	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.534
nifJ2	tRNA	CBO2760	CBO0047	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	5S ribosomal RNA; Cove score 85.71.	0.526
ppiB	nifJ1	CBO3561	CBO1192	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	0.507
ppiB	nifJ2	CBO3561	CBO2760	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	0.426
ppiB	tRNA	CBO3561	CBO0047	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	5S ribosomal RNA; Cove score 85.71.	0.521
rpoB	nifJ1	CBO3488	CBO1192	DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).	0.591
rpoB	nifJ2	CBO3488	CBO2760	DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).	0.534
rpoB	tRNA	CBO3488	CBO0047	DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	5S ribosomal RNA; Cove score 85.71.	0.493