Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CBO0069Conserved hypothetical protein; Similar to Clostridium acetobutylicum predicted metal-binding protein cac0438 SWALL:Q97LW6 (EMBL:AE007558) (80 aa) fasta scores: E(): 1.4e-16, 53.75 38d in 80 aa. No similarity to any other protein in the database. (80 aa)    
Predicted Functional Partners:
spmA
Similar to Bacillus subtilis spore maturation protein A SpmA or bsu23180 SWALL:SPMA_BACSU (SWALL:P35157) (196 aa) fasta scores: E(): 6.1e-26, 40.83 38d in 191 aa,and to Clostridium tetani spore maturation protein A ctc00238 SWALL:Q899E4 (EMBL:AE015936) (197 aa) fasta scores: E(): 3.7e-46, 61.78 38d in 191 aa.
       0.649
spmB
Similar to Bacillus subtilis spore maturation protein B SpmB or bsu23170 SWALL:SPMB_BACSU (SWALL:P35158) (179 aa) fasta scores: E(): 4.1e-25, 41.61 38d in 173 aa,and to Clostridium acetobutylicum spore maturation protein B cac0470 SWALL:Q97LT4 (EMBL:AE007561) (173 aa) fasta scores: E(): 2.7e-45, 69.59 38d in 171 aa.
       0.637
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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