Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spmASimilar to Bacillus subtilis spore maturation protein A SpmA or bsu23180 SWALL:SPMA_BACSU (SWALL:P35157) (196 aa) fasta scores: E(): 6.1e-26, 40.83 38d in 191 aa,and to Clostridium tetani spore maturation protein A ctc00238 SWALL:Q899E4 (EMBL:AE015936) (197 aa) fasta scores: E(): 3.7e-46, 61.78 38d in 191 aa. (191 aa)    
Predicted Functional Partners:
spmB
Similar to Bacillus subtilis spore maturation protein B SpmB or bsu23170 SWALL:SPMB_BACSU (SWALL:P35158) (179 aa) fasta scores: E(): 4.1e-25, 41.61 38d in 173 aa,and to Clostridium acetobutylicum spore maturation protein B cac0470 SWALL:Q97LT4 (EMBL:AE007561) (173 aa) fasta scores: E(): 2.7e-45, 69.59 38d in 171 aa.
  
 0.999
spoIIIAD
Stage III sporulation protein AD.
  
  
 0.827
spoIIIAB
Stage III sporulation protein AB.
  
  
 0.824
tlp
Putative acid-soluble spore protein; Belongs to the Tlp family.
      
 0.764
yqfC
Conserved hypothetical protein.
      
 0.759
spoIIM
Putative stage II sporulation protein.
  
  
 0.722
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.694
spoIIIAA
Stage III sporulation protein AA.
  
  
 0.685
spoIIP
Putative stage II sporulation protein P.
  
   
 0.679
CBO0069
Conserved hypothetical protein; Similar to Clostridium acetobutylicum predicted metal-binding protein cac0438 SWALL:Q97LW6 (EMBL:AE007558) (80 aa) fasta scores: E(): 1.4e-16, 53.75 38d in 80 aa. No similarity to any other protein in the database.
       0.649
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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