STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spmBSimilar to Bacillus subtilis spore maturation protein B SpmB or bsu23170 SWALL:SPMB_BACSU (SWALL:P35158) (179 aa) fasta scores: E(): 4.1e-25, 41.61 38d in 173 aa,and to Clostridium acetobutylicum spore maturation protein B cac0470 SWALL:Q97LT4 (EMBL:AE007561) (173 aa) fasta scores: E(): 2.7e-45, 69.59 38d in 171 aa. (172 aa)    
Predicted Functional Partners:
spmA
Similar to Bacillus subtilis spore maturation protein A SpmA or bsu23180 SWALL:SPMA_BACSU (SWALL:P35157) (196 aa) fasta scores: E(): 6.1e-26, 40.83 38d in 191 aa,and to Clostridium tetani spore maturation protein A ctc00238 SWALL:Q899E4 (EMBL:AE015936) (197 aa) fasta scores: E(): 3.7e-46, 61.78 38d in 191 aa.
  
 0.999
spoIIIAB
Stage III sporulation protein AB.
  
  
 0.839
ylbJ
Putative membrane protein.
 
  
 0.793
yqfC
Conserved hypothetical protein.
  
   
 0.784
spoIIM
Putative stage II sporulation protein.
  
  
 0.773
tlp
Putative acid-soluble spore protein; Belongs to the Tlp family.
      
 0.763
spoIIIAD
Stage III sporulation protein AD.
  
   
 0.757
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.749
spoIIIAA
Stage III sporulation protein AA.
  
  
 0.743
spoIIP
Putative stage II sporulation protein P.
  
  
 0.651
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.