STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0076Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe2521 SWALL:Q8XHG4 (EMBL:AP003194) (499 aa) fasta scores: E(): 1.5e-43, 34.32 38d in 507 aa, and to Listeria monocytogenes hypothetical protein Lmo2224 SWALL:Q8Y552 (EMBL:AL591982) (377 aa) fasta scores: E(): 1.6e-08, 23.49 38d in 498 aa. (501 aa)    
Predicted Functional Partners:
CBO0077
Putative TatD-family hydrolase; Similar to Clostridium acetobutylicum php superfamily hydrolase, yabd ortholog cac2989 SWALL:Q97EW7 (EMBL:AE007795) (253 aa) fasta scores: E(): 1e-64, 68.65 id in 252 aa, and to Clostridium perfringens hypothetical protein Cpe2520 SWALL:Q8XHG5 (EMBL:AP003194) (256 aa) fasta scores: E(): 1e-61, 63.92 38d in 255 aa.
       0.705
CBO0079
Putative enterocin immunity protein (partial); 1 probable transmembrane helix predicted for CBO0078 by TMHMM2.0 at aa 18-40.
     
 0.593
CBO0551
Putative membrane protein.
   
    0.566
CBO0601
Putative membrane protein.
   
    0.566
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.538
CBO3221
Putative ABC transporter periplasmic binding protein.
  
     0.469
CBO1251
Putative lipoprotein; No significant database matches.
   
    0.465
CBO1379
Two-component sensor histidine kinase.
  
    0.405
CBO0087
Similar to Clostridium tetani ABC transporter permease protein ctc00486 SWALL:Q898G6 (EMBL:AE015937) (404 aa) fasta scores: E(): 1e-60, 47.66 38d in 407 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, permease components tte1198 SWALL:Q8RAL5 (EMBL:AE013082) (405 aa) fasta scores: E(): 4.1e-65, 50.73 38d in 406 aa.
  
    0.402
cbiQ
Putative cobalt transport protein.
  
     0.401
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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