Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO0079Putative enterocin immunity protein (partial); 1 probable transmembrane helix predicted for CBO0078 by TMHMM2.0 at aa 18-40. (352 aa)    
Predicted Functional Partners:
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.893
rnmV
Conserved hypothetical protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
     
 0.842
CBO0077
Putative TatD-family hydrolase; Similar to Clostridium acetobutylicum php superfamily hydrolase, yabd ortholog cac2989 SWALL:Q97EW7 (EMBL:AE007795) (253 aa) fasta scores: E(): 1e-64, 68.65 id in 252 aa, and to Clostridium perfringens hypothetical protein Cpe2520 SWALL:Q8XHG5 (EMBL:AP003194) (256 aa) fasta scores: E(): 1e-61, 63.92 38d in 255 aa.
     
 0.762
ispE
4-diphosphocytidyl-2-c-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.677
CBO0117
Putative peptidoglycan binding protein; Similar to Clostridium tetani conserved protein ctc00280 SWALL:Q899A5 (EMBL:AE015936) (520 aa) fasta scores: E(): 8e-105, 53.07 38d in 520 aa, and to Clostridium acetobutylicum lysm domain containing membrane protein cac2903 SWALL:Q97F50 (EMBL:AE007787) (520 aa) fasta scores: E(): 1.9e-86, 45.76 38d in 520 aa.
  
  
 0.658
CBO1738
Putative phage protein.
  
  
 0.658
CBO2337
Hypothetical phage protein.
  
  
 0.658
CBO0082
Similar to Clostridium tetani conserved protein ctc00249 SWALL:Q899D4 (EMBL:AE015936) (438 aa) fasta scores: E(): 3.8e-27, 45.7 38d in 431 aa, and to Clostridium acetobutylicum hypothetical protein Cac2985 SWALL:Q97EX1 (EMBL:AE007795) (491 aa) fasta scores: E(): 5.8e-27, 40.65 38d in 487 aa.
       0.642
CBO0076
Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe2521 SWALL:Q8XHG4 (EMBL:AP003194) (499 aa) fasta scores: E(): 1.5e-43, 34.32 38d in 507 aa, and to Listeria monocytogenes hypothetical protein Lmo2224 SWALL:Q8Y552 (EMBL:AL591982) (377 aa) fasta scores: E(): 1.6e-08, 23.49 38d in 498 aa.
     
 0.626
CBO2809
Putative exported protein.
 
  
0.611
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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