Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0084Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00252 SWALL:Q899D1 (EMBL:AE015936) (279 aa) fasta scores: E(): 2e-49, 52.51 38d in 278 aa, and to Clostridium acetobutylicum hypothetical protein Cac2983 cac2983 SWALL:Q97EX3 (EMBL:AE007795) (284 aa) fasta scores: E(): 1.4e-40, 45.93 38d in 283 aa. (277 aa)    
Predicted Functional Partners:
CBO0083
Putative exported protein; Similar to Clostridium acetobutylicum hypothetical protein Cac2984 SWALL:Q97EX2 (EMBL:AE007795) (221 aa) fasta scores: E(): 6.8e-24, 36.92 38d in 195 aa, and to Clostridium tetani conserved membrane-associated protein ctc00250 SWALL:Q899D3 (EMBL:AE015936) (196 aa) fasta scores: E(): 6.2e-19, 34.02 38d in 194 aa.
       0.593
CBO0079
Putative enterocin immunity protein (partial); 1 probable transmembrane helix predicted for CBO0078 by TMHMM2.0 at aa 18-40.
       0.508
CBO0088
Putative ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.503
CBO0082
Similar to Clostridium tetani conserved protein ctc00249 SWALL:Q899D4 (EMBL:AE015936) (438 aa) fasta scores: E(): 3.8e-27, 45.7 38d in 431 aa, and to Clostridium acetobutylicum hypothetical protein Cac2985 SWALL:Q97EX1 (EMBL:AE007795) (491 aa) fasta scores: E(): 5.8e-27, 40.65 38d in 487 aa.
       0.476
CBO0085
Putative exported protein; Similar to Thermoanaerobacter tengcongensis membrane-fusion protein acra2 or tte1200 SWALL:Q8RAL3 (EMBL:AE013082) (390 aa) fasta scores: E(): 1.4e-23,37.98 38d in 387 aa, and to Clostridium tetani conserved membrane-associated protein ctc00484 SWALL:Q898G8 (EMBL:AE015937) (437 aa) fasta scores: E(): 9e-15, 25.87 id in 429 aa.
       0.463
CBO0086
Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00485 SWALL:Q898G7 (EMBL:AE015937) (238 aa) fasta scores: E(): 1.8e-49, 64.31 38d in 227 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, ATPase components phnl2 or tte1199 SWALL:Q8RAL4 (EMBL:AE013082) (231 aa) fasta scores: E(): 9e-49, 62.55 38d in 227 aa.
       0.454
CBO0087
Similar to Clostridium tetani ABC transporter permease protein ctc00486 SWALL:Q898G6 (EMBL:AE015937) (404 aa) fasta scores: E(): 1e-60, 47.66 38d in 407 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, permease components tte1198 SWALL:Q8RAL5 (EMBL:AE013082) (405 aa) fasta scores: E(): 4.1e-65, 50.73 38d in 406 aa.
       0.454
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.430
rnmV
Conserved hypothetical protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
       0.428
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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