Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0087Similar to Clostridium tetani ABC transporter permease protein ctc00486 SWALL:Q898G6 (EMBL:AE015937) (404 aa) fasta scores: E(): 1e-60, 47.66 38d in 407 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, permease components tte1198 SWALL:Q8RAL5 (EMBL:AE013082) (405 aa) fasta scores: E(): 4.1e-65, 50.73 38d in 406 aa. (402 aa)    
Predicted Functional Partners:
CBO0086
Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00485 SWALL:Q898G7 (EMBL:AE015937) (238 aa) fasta scores: E(): 1.8e-49, 64.31 38d in 227 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, ATPase components phnl2 or tte1199 SWALL:Q8RAL4 (EMBL:AE013082) (231 aa) fasta scores: E(): 9e-49, 62.55 38d in 227 aa.
 0.999
CBO0085
Putative exported protein; Similar to Thermoanaerobacter tengcongensis membrane-fusion protein acra2 or tte1200 SWALL:Q8RAL3 (EMBL:AE013082) (390 aa) fasta scores: E(): 1.4e-23,37.98 38d in 387 aa, and to Clostridium tetani conserved membrane-associated protein ctc00484 SWALL:Q898G8 (EMBL:AE015937) (437 aa) fasta scores: E(): 9e-15, 25.87 id in 429 aa.
 
 0.997
CBO1224
Transporter, ATP-binding protein.
 
 0.992
CBO0587
ABC transporter, ATP-binding protein.
   0.951
CBO0783
ABC transporter, ATP-binding protein.
   0.938
CBO1950
ABC transporter, ATP-binding protein.
   0.934
CBO1510
ABC transporter, ATP-binding protein.
   0.933
CBO3166
Putative ABC transporter, ATP-binding protein.
   0.921
CBO0274
Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00394 SWALL:Q898P9 (EMBL:AE015937) (256 aa) fasta scores: E(): 1.2e-81, 95.31 38d in 256 aa.
   0.913
CBO1396
ABC transporter, ATP-binding protein.
   0.884
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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