Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0089Ferredoxin; Similar to Thermotoga maritima ferredoxin Fdx or tm0927 SWALL:FER_THEMA (SWALL:P46797) (60 aa) fasta scores: E(): 0.00016, 38.98 38d in 59 aa, and to Clostridium perfringens ferredoxin Fer or cpe2511 SWALL:Q8XHH3 (EMBL:AP003194) (62 aa) fasta scores: E(): 3.4e-07, 45.76 38d in 59 aa. (63 aa)    
Predicted Functional Partners:
CBO0090
Putative membrane protein; Similar to Borrelia turicatae repeat motif protein BdrA6- SWALL:Q9RGH2 (EMBL:AF128449) (62 aa) fasta scores: E(): 2.8, 36.36 38d in 55 aa, and to Plasmodium yoelii yoelii hypothetical protein py07231 SWALL:EAA19615 (EMBL:AABL01002604) (76 aa) fasta scores: E(): 2.7, 31.25 id in 48 aa.
       0.737
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
     
 0.696
nifJ2
Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).
     
 0.665
hymB
Putative electron-transferring subunit of iron-only hydrogenase.
     
 0.576
CBO3192
Putative ferredoxin.
  
     0.563
CBO0088
Putative ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.520
fliO
Putative flagellar biosynthesis protein.
  
     0.452
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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