STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0091Hypothetical protein; No significant database matches. (58 aa)    
Predicted Functional Partners:
CBO0092
Similar to Clostridium tetani signaling protein ctc01837 SWALL:Q893I5 (EMBL:AE015942) (449 aa) fasta scores: E(): 1.8e-10, 26.93 38d in 427 aa, and to Shewanella oneidensis cyclic nucleotide phosphodiesterase,putative so3556 SWALL:Q8EBG2 (EMBL:AE015792) (420 aa) fasta scores: E(): 3.6e-15, 24.37 38d in 357 aa.
       0.552
CBO0093
Putative cations transporter; Similar to Bacillus subtilis SapB protein or bsu06650 SWALL:SAPB_BACSU (SWALL:Q45514) (232 aa) fasta scores: E(): 7.7e-13, 28.15 38d in 206 aa, and to Clostridium perfringens probable Mg2+ transport protein cpe0592 SWALL:Q8XMU6 (EMBL:AP003187) (241 aa) fasta scores: E(): 1.2e-27, 39.24 38d in 237 aa.
       0.438
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.