STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0102Similar to Escherichia coli mannose-1-phosphate guanylyltransferase manc or rfbm or rfbm1 SWALL:RFM9_ECOLI (SWALL:P37753) (471 aa) fasta scores: E(): 5.4e-36, 36.51 id in 356 aa, and to Clostridium tetani mannose-6-phosphate isomerase ctc00265 SWALL:Q899C0 (EMBL:AE015936) (355 aa) fasta scores: E(): 5.9e-94,70.33 38d in 354 aa. (355 aa)    
Predicted Functional Partners:
CBO3093
Phospho-glucosyltransferase.
 
  
 0.892
CBO2718
Glucose-1-phosphate cytidylyltransferase.
  
 
 0.883
CBO2055
Glucose-1-phosphate thymidylyltransferase.
  
 
 0.875
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.857
glmU
Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
    
 0.836
mnaA
Similar to Bacillus subtilis udp-N-acetylglucosamine 2-epimerase MnaA or bsu35660 SWALL:MNAA_BACSU (SWALL:P39131) (380 aa) fasta scores: E(): 7.6e-76, 56.69 38d in 381 aa, and to Clostridium perfringens udp-N-acetylglucosamine 2-epimerase cpe2196 SWALL:Q8XIC5 (EMBL:AP003193) (384 aa) fasta scores: E(): 2.5e-107, 77.16 38d in 381 aa.
    
 0.832
CBO2101
Putative tetracycline resistance protein; Similar to internal regions of database matches. Also highly similar to an internal region of CBO2104 (93.9 38d); was marked partial.
    
 0.831
CBO2679
Putative UDP-glucose 4-epimerase.
    
 0.831
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.831
murA
udp-N-acetylglucosamine 1-carboxyvinyltransferase 1; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
    
  0.805
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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