STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0102Similar to Escherichia coli mannose-1-phosphate guanylyltransferase manc or rfbm or rfbm1 SWALL:RFM9_ECOLI (SWALL:P37753) (471 aa) fasta scores: E(): 5.4e-36, 36.51 id in 356 aa, and to Clostridium tetani mannose-6-phosphate isomerase ctc00265 SWALL:Q899C0 (EMBL:AE015936) (355 aa) fasta scores: E(): 5.9e-94,70.33 38d in 354 aa. (355 aa)    
Predicted Functional Partners:
CBO3093
Phospho-glucosyltransferase.
 
  
 0.864
mviN
Capsular polysaccharide biosynthesis protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
     
 0.692
CBO0108
Putative glycosyl transferase; Similar to Escherichia coli mannosyltransferase B MtfB SWALL:Q47594 (EMBL:D43637) (381 aa) fasta scores: E(): 2.5e-24, 30.58 38d in 291 aa, and to Clostridium tetani mannosyltransferase ctc00268 SWALL:Q899B7 (EMBL:AE015936) (374 aa) fasta scores: E(): 2.1e-77,55.94 38d in 370 aa; Also similar to the nearby CDS, CBO0113, (44.892 ide. in 372 aa overlap).
 
  
 0.690
uppS-2
Putative undecaprenyl pyrophosphate synthetase.
     
 0.652
CBO2686
Putative sugar transferase.
 
  
 0.651
tagO
Similar to Bacillus subtilis probable undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase tago or bsu35530 SWALL:TAGO_BACSU (SWALL:O34753) (358 aa) fasta scores: E(): 7.2e-47, 41.32 id in 346 aa, and to Clostridium tetani putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase ctc00310 SWALL:Q898X7 (EMBL:AE015936) (353 aa) fasta scores: E(): 9e-86, 67.85 38d in 336 aa.
     
 0.624
CBO0113
Putative glycosyl transferase; Similar to Escherichia coli mannosyltransferase B MtfB SWALL:Q47594 (EMBL:D43637) (381 aa) fasta scores: E(): 8.8e-32, 32.55 38d in 384 aa, and to Clostridium tetani mannosyltransferase ctc00272 SWALL:Q899B3 (EMBL:AE015936) (384 aa) fasta scores: E(): 1.5e-84,60.85 38d in 373 aa; Also similar to the nearby CDS, CBO0108, (44.892 ide. in 372 aa overlap).
 
  
 0.622
CBO0101
Conserved hypothetical protein; Similar to Clostridium tetani DNA helicase ctc00264 SWALL:Q899C1 (EMBL:AE015936) (1352 aa) fasta scores: E(): 1e-180, 40.17 38d in 1359 aa, and to Clostridium acetobutylicum superfamily i DNA helicase cac3036 SWALL:Q97ES1 (EMBL:AE007800) (1351 aa) fasta scores: E(): 2.2e-177, 41.54 38d in 1343 aa.
       0.585
CBO2766A
Putative glucose translocase.
  
  
 0.540
rrf
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
      
 0.533
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.