STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0107Solute-binding protein; Similar to Agrobacterium radiobacter lactose-binding protein precursor LacE SWALL:LACE_AGRRD (SWALL:P29822) (422 aa) fasta scores: E(): 1.9e-12, 21.24 id in 386 aa, and to Clostridium acetobutylicum sugar-binding periplasmic protein cac2912 SWALL:Q97F41 (EMBL:AE007788) (432 aa) fasta scores: E(): 4.3e-18,22.63 38d in 433 aa. (424 aa)    
Predicted Functional Partners:
CBO1516
ABC transporter, permease protein.
 
 
 0.949
CBO1517
ABC transporter, permease protein.
 
 
 0.926
CBO1515
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.823
CBO0963
Putative molybdenum ABC transporter, ATP-binding protein.
  
 
 0.746
tupC
ATPase component of tungstate ABC transporter.
  
 
 0.746
radA
DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
      
 0.670
opuCB
Glycine betaine/carnitine/choline transport system permease protein opucb.
   
  
 0.638
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein.
      
 0.570
CBO0106
Radical SAM superfamily protein; Similar to Clostridium tetani Fe-s oxidoreductase ctc00266 SWALL:Q899B9 (EMBL:AE015936) (460 aa) fasta scores: E(): 2.1e-137, 71.08 38d in 460 aa, and to Clostridium acetobutylicum moaa/nirj family fe-s oxidoreductase cac2791 SWALL:Q97FE9 (EMBL:AE007776) (461 aa) fasta scores: E(): 2.8e-119, 61.6 38d in 461 aa.
       0.555
CBO0571
Conserved hypothetical protein.
  
     0.458
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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