STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0109Spore coat protein; Similar to Bacillus subtilis spore coat protein S CotS or bsu30900 SWALL:COTS_BACSU (SWALL:P46914) (351 aa) fasta scores: E(): 4.6e-06, 19.63 38d in 331 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2910 SWALL:Q97F43 (EMBL:AE007788) (335 aa) fasta scores: E(): 3.8e-69, 52.25 38d in 333 aa. (336 aa)    
Predicted Functional Partners:
CBO0112
Spore coat protein; Similar to Bacillus subtilis spore coat protein S CotS or bsu30900 SWALL:COTS_BACSU (SWALL:P46914) (351 aa) fasta scores: E(): 5.4e-11, 25.43 38d in 342 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2908 SWALL:Q97F45 (EMBL:AE007788) (344 aa) fasta scores: E(): 6.1e-61, 49.84 38d in 331 aa. Also similar to CBO0114 (32.390 38d), CBO0109 (32.537) and to CBO0111 (21.756).
 
   
0.908
CBO0108
Putative glycosyl transferase; Similar to Escherichia coli mannosyltransferase B MtfB SWALL:Q47594 (EMBL:D43637) (381 aa) fasta scores: E(): 2.5e-24, 30.58 38d in 291 aa, and to Clostridium tetani mannosyltransferase ctc00268 SWALL:Q899B7 (EMBL:AE015936) (374 aa) fasta scores: E(): 2.1e-77,55.94 38d in 370 aa; Also similar to the nearby CDS, CBO0113, (44.892 ide. in 372 aa overlap).
 
    0.905
CBO0111
Spore coat protein; Similar to Clostridium tetani putative spore coat protein ctc00270 SWALL:Q899B5 (EMBL:AE015936) (256 aa) fasta scores: E(): 1.2e-19, 35.84 38d in 226 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2909 SWALL:Q97F44 (EMBL:AE007788) (251 aa) fasta scores: E(): 1.5e-18, 31.78 38d in 258 aa.
  
    0.806
CBO0110
Hypothetical protein; No significant database matches.
       0.759
CBO0082
Similar to Clostridium tetani conserved protein ctc00249 SWALL:Q899D4 (EMBL:AE015936) (438 aa) fasta scores: E(): 3.8e-27, 45.7 38d in 431 aa, and to Clostridium acetobutylicum hypothetical protein Cac2985 SWALL:Q97EX1 (EMBL:AE007795) (491 aa) fasta scores: E(): 5.8e-27, 40.65 38d in 487 aa.
  
     0.678
CBO3559
Putative transcriptional regulator.
  
     0.655
CBO3325
Conserved hypothetical protein.
  
     0.642
CBO3174
Conserved integral membrane protein.
  
     0.629
CBO3145
Small acid-soluble spore protein.
  
     0.622
ytxC
Conserved hypothetical protein.
  
    0.609
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.