Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yabGProbable peptidase; Similar to Clostridium tetani conserved protein ctc00279 SWALL:Q899A6 (EMBL:AE015936) (300 aa) fasta scores: E(): 3.5e-69, 65.21 38d in 299 aa, and to Clostridium acetobutylicum uncharacterized protein, yabg b.subtilis ortholog cac2905 SWALL:Q97F48 (EMBL:AE007788) (300 aa) fasta scores: E(): 8.1e-69, 61.79 38d in 301 aa. (300 aa)    
Predicted Functional Partners:
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.722
sigK
RNA polymerase sigma-28 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.722
CBO1812
RpiR-family transcriptional regulator.
      
 0.709
spoIIIAE
Stage III sporulation protein AE.
  
   
 0.709
CBO0114
Spore coat protein; Similar to Bacillus subtilis YtaA protein SWALL:O34656 (EMBL:Z99119) (357 aa) fasta scores: E(): 1.3e-20, 28.1 38d in 306 aa, and to Clostridium tetani spore coat protein ctc00273 SWALL:Q899B2 (EMBL:AE015936) (337 aa) fasta scores: E(): 8.4e-95, 71.85 38d in 334 aa. Also similar to CBO0112 (32.390 38d), CBO0109 (31.077).
 
  
 0.706
yabP
Conserved hypothetical protein.
  
   
 0.667
gpr
Germination protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.650
spoIIIAD
Stage III sporulation protein AD.
  
     0.618
spoIIID
Similar to Bacillus subtilis stage III sporulation protein D SpoIIID or bsu36420 SWALL:SP3D_BACSU (SWALL:P15281) (93 aa) fasta scores: E(): 1.1e-16, 62.65 id in 83 aa, and to Clostridium acetobutylicum stage iii sporulation protein D SpoIIID cac2859 SWALL:Q97F82 (EMBL:AE007783) (84 aa) fasta scores: E(): 9e-24, 89.28 id in 84 aa.
  
   
 0.587
sigE
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.584
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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