Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0124Similar to Bacillus subtilis spore germination protein A2 GerAb or GerA2 or bsu33060 SWALL:GRAB_BACSU (SWALL:P07869) (365 aa) fasta scores: E(): 4.9e-24, 27.92 id in 351 aa, and to Clostridium tetani spore germination protein A2 ctc00286 SWALL:Q899A0 (EMBL:AE015936) (369 aa) fasta scores: E(): 1.3e-72, 50.13 38d in 363 aa. (365 aa)    
Predicted Functional Partners:
CBO0123
Similar to Bacillus cereus spore germination protein GerlA SWALL:Q93N70 (EMBL:AF387344) (492 aa) fasta scores: E(): 7.4e-71, 40.43 38d in 502 aa, and to Clostridium tetani spore germination protein b1 ctc00285 SWALL:Q899A1 (EMBL:AE015936) (492 aa) fasta scores: E(): 3.1e-111, 64.34 38d in 502 aa.
 
  
 0.985
CBO0125
Similar to Bacillus cereus spore germination protein GerlC SWALL:Q93N68 (EMBL:AF387344) (390 aa) fasta scores: E(): 1.8e-14, 27.36 38d in 402 aa, and to Clostridium tetani spore germination protein A3 ctc00287 SWALL:Q898Z9 (EMBL:AE015936) (394 aa) fasta scores: E(): 1.6e-56, 37.72 38d in 395 aa.
 
  
 0.981
gerAA-2
Spore germination protein.
 
  
 0.900
gerAC-2
Spore germination protein.
 
  
 0.848
gerAA
Spore germination protein.
 
  
 0.808
spoIIR
Similar to Bacillus subtilis stage II sporulation protein R SpoIIR or Ipc-27d or bsu36970 SWALL:SP2R_BACSU (SWALL:P39151) (224 aa) fasta scores: E(): 1.9e-18, 35.71 id in 224 aa, and to Clostridium perfringens stage II sporulation protein R SpoIIR or cpe2211 SWALL:Q8XIB0 (EMBL:AP003193) (209 aa) fasta scores: E(): 1.5e-37,55.34 38d in 206 aa.
 
   
 0.787
spoIIIAB
Stage III sporulation protein AB.
  
     0.741
gerAC
Spore germination protein.
 
  
 0.739
spoIIM
Putative stage II sporulation protein.
  
   
 0.736
ylbJ
Putative membrane protein.
  
   
 0.722
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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