STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypeBSporulation protein; Similar to Bacillus subtilis sporulation protein YpeB or JoeB or bsu22920 SWALL:YPEB_BACSU (SWALL:P38490) (450 aa) fasta scores: E(): 1e-27, 26.57 38d in 444 aa,and to Clostridium tetani conserved membrane-associated protein ctc00290 SWALL:Q898Z6 (EMBL:AE015936) (455 aa) fasta scores: E(): 2.7e-92, 57.54 38d in 457 aa. (456 aa)    
Predicted Functional Partners:
sleB
Similar to Bacillus cereus spore cortex-lytic enzyme precursor SleB or bc2753 SWALL:SLEB_BACCR (SWALL:P70874) (259 aa) fasta scores: E(): 1.6e-25, 42.85 id in 259 aa, and to Clostridium tetani spore-cortex-lytic enzyme precursor ctc00350 SWALL:Q898U1 (EMBL:AE015937) (255 aa) fasta scores: E(): 5e-62, 65.93 38d in 229 aa.
 
  
 0.951
cwlJ
Putative cell wall hydrolase.
 
  
 0.918
CBO3432
Putative spore cortex-lytic enzyme; Similar to the C-terminal region of Bacillus cereus spore cortex-lytic enzyme precursor sleb or bc2753 SWALL:SLEB_BACCR (SWALL:P70874) (259 aa) fasta scores: E(): 2.1e-13, 42.52 38d in 127 aa.
 
  
 0.780
CBO0125
Similar to Bacillus cereus spore germination protein GerlC SWALL:Q93N68 (EMBL:AF387344) (390 aa) fasta scores: E(): 1.8e-14, 27.36 38d in 402 aa, and to Clostridium tetani spore germination protein A3 ctc00287 SWALL:Q898Z9 (EMBL:AE015936) (394 aa) fasta scores: E(): 1.6e-56, 37.72 38d in 395 aa.
 
     0.757
CBO0130
Similar to Clostridium tetani conserved protein ctc00293 SWALL:Q898Z3 (EMBL:AE015936) (143 aa) fasta scores: E(): 1.5e-24, 54.22 38d in 142 aa, and to Clostridium acetobutylicum uncharacterized protein, ywib b.subtilis homolog cac2894 SWALL:Q97F59 (EMBL:AE007787) (137 aa) fasta scores: E(): 1.7e-20, 52.55 38d in 137 aa.
 
     0.745
CBO0129
Similar to Clostridium tetani conserved protein ctc00292 SWALL:Q898Z4 (EMBL:AE015936) (326 aa) fasta scores: E(): 7.2e-89, 71.77 38d in 326 aa, and to Clostridium perfringens hypothetical protein Cpe2210 cpe2210 SWALL:Q8XIB1 (EMBL:AP003193) (326 aa) fasta scores: E(): 1.1e-78, 67.79 38d in 326 aa.
       0.731
gerAB1
Spore germination protein (partial); Possible gene remnant. Similar to the C-terminal region of Clostridium sporogenes spore germination protein GerAA SWALL:Q8KR40 (EMBL:AY046406) (499 aa) fasta scores: E(): 0.046, 42.59 38d in 54 aa; was marked partial.
  
     0.722
gerAB
Spore germination protein.
  
   
 0.710
gerAB2
Spore germination protein; This CDS is also similar to CBO1974 (65.374 38d. in 361 aa overlap), CBO1978 (50.413 38d. in 363 aa overlap),CBO2796 (36.957 38d. in 368 aa overlap) and to CBO2300 (32.682 38d. in 358 aa overlap).
  
     0.704
gerAB3
Spore germination protein; This CDS is also similar to CBO1976 (50.4 38d. in 363 aa overlap), CBO1974 (49.58 38d. in 361 aa overlap),CBO2300 (36.827 38d. in 353 aa overlap) and to CBO2796 (37.7 38d. in 366 aa overlap).
  
     0.700
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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