Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0129Similar to Clostridium tetani conserved protein ctc00292 SWALL:Q898Z4 (EMBL:AE015936) (326 aa) fasta scores: E(): 7.2e-89, 71.77 38d in 326 aa, and to Clostridium perfringens hypothetical protein Cpe2210 cpe2210 SWALL:Q8XIB1 (EMBL:AP003193) (326 aa) fasta scores: E(): 1.1e-78, 67.79 38d in 326 aa. (326 aa)    
Predicted Functional Partners:
CBO0130
Similar to Clostridium tetani conserved protein ctc00293 SWALL:Q898Z3 (EMBL:AE015936) (143 aa) fasta scores: E(): 1.5e-24, 54.22 38d in 142 aa, and to Clostridium acetobutylicum uncharacterized protein, ywib b.subtilis homolog cac2894 SWALL:Q97F59 (EMBL:AE007787) (137 aa) fasta scores: E(): 1.7e-20, 52.55 38d in 137 aa.
       0.767
ypeB
Sporulation protein; Similar to Bacillus subtilis sporulation protein YpeB or JoeB or bsu22920 SWALL:YPEB_BACSU (SWALL:P38490) (450 aa) fasta scores: E(): 1e-27, 26.57 38d in 444 aa,and to Clostridium tetani conserved membrane-associated protein ctc00290 SWALL:Q898Z6 (EMBL:AE015936) (455 aa) fasta scores: E(): 2.7e-92, 57.54 38d in 457 aa.
       0.638
CBO0131
Similar to Clostridium tetani hypothetical protein ctc00294 SWALL:Q898Z2 (EMBL:AE015936) (113 aa) fasta scores: E(): 3.3e-15, 49 38d in 100 aa, and to Clostridium acetobutylicum hypothetical protein Cac2893 SWALL:Q97F60 (EMBL:AE007787) (95 aa) fasta scores: E(): 1.9e-09, 36.66 id in 90 aa.
       0.581
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.542
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
  
 0.537
CBO0183
Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Fusobacterium nucleatum coenzyme a disulfide reductase/ disulfide bond regulator domain fn1903 SWALL:Q8RHU1 (EMBL:AE010492) (810 aa) fasta scores: E(): 1e-163, 56.35 38d in 818 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 coenzyme a disulfide reductase/ disulfide bond regulator domain fnv2089 SWALL:Q7P7P1 (EMBL:AABF01000012) (809 aa) fasta scores: E(): 2.7e-159, 55.5 38d in 818 aa; Belongs to the sulfur carrier protein TusA family.
     
 0.496
gidA
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
 
 
 0.455
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.448
ddlB
D-alanine--d-alanine ligase B; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
  
 0.414
pheT
phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.405
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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