Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO0161Putative secreted peptidase; Similar to Clostridium tetani conserved membrane-associated protein ctc00316 SWALL:Q898X1 (EMBL:AE015936) (271 aa) fasta scores: E(): 1.1e-27, 51.6 id in 250 aa, and to Clostridium perfringens hypothetical protein Cpe2182 cpe2182 SWALL:Q8XID9 (EMBL:AP003193) (256 aa) fasta scores: E(): 1.5e-17, 32.94 38d in 255 aa. (248 aa)    
Predicted Functional Partners:
CBO3606
Putative exported peptidase.
  
    0.759
spoIIID
Similar to Bacillus subtilis stage III sporulation protein D SpoIIID or bsu36420 SWALL:SP3D_BACSU (SWALL:P15281) (93 aa) fasta scores: E(): 1.1e-16, 62.65 id in 83 aa, and to Clostridium acetobutylicum stage iii sporulation protein D SpoIIID cac2859 SWALL:Q97F82 (EMBL:AE007783) (84 aa) fasta scores: E(): 9e-24, 89.28 id in 84 aa.
  
    0.646
mreB
Rod shape-determining protein; Similar to Escherichia coli, Escherichia coli O6,Salmonella typhimurium, Salmonella typhi, and Shigella flexneri rod shape-determining protein MreB SWALL:MREB_ECOLI (SWALL:P13519) (347 aa) fasta scores: E(): 4.4e-58, 51.67 38d in 329 aa, and to Clostridium tetani rod shape-determining protein MreB mreb or ctc00318 SWALL:Q898X0 (EMBL:AE015937) (343 aa) fasta scores: E(): 1.4e-89, 76.6 38d in 342 aa.
       0.522
spoIID
Similar to Bacillus subtilis stage ii sporulation protein D SpoIID or spoIIC or bsu36750 SWALL:SP2D_BACSU (SWALL:P07372) (343 aa) fasta scores: E(): 2.9e-17, 35.07 id in 345 aa, and to Clostridium tetani stage II sporulation protein D ctc00315 SWALL:Q898X2 (EMBL:AE015936) (376 aa) fasta scores: E(): 1.9e-56,48.17 38d in 357 aa.
 
   
 0.491
CBO2553
Putative recombinase (partial); PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
  
   
 0.420
murA
udp-N-acetylglucosamine 1-carboxyvinyltransferase 1; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
     0.413
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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