STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yyaCConserved hypothetical protein; Similar to Clostridium acetobutylicum spore protease gpr related protein, yyac b.subtilis ortholog cac2857 SWALL:Q97F84 (EMBL:AE007783) (188 aa) fasta scores: E(): 4e-36, 59.06 38d in 171 aa. (174 aa)    
Predicted Functional Partners:
gpr
Germination protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.887
spoVT
Stage V sporulation protein T.
  
  
 0.746
spoIIIAD
Stage III sporulation protein AD.
  
     0.736
spoIIIAE
Stage III sporulation protein AE.
  
     0.725
spoIIE
Putative stage II sporulation protein.
  
   
 0.710
CBO0165
Conserved hypothetical protein; Similar to Clostridium tetani ATPase of the pp-loop superfamily ctc00320 SWALL:Q898W8 (EMBL:AE015937) (236 aa) fasta scores: E(): 5.2e-62, 64.4 38d in 236 aa; Belongs to the TtcA family.
       0.700
spoIIR
Similar to Bacillus subtilis stage II sporulation protein R SpoIIR or Ipc-27d or bsu36970 SWALL:SP2R_BACSU (SWALL:P39151) (224 aa) fasta scores: E(): 1.9e-18, 35.71 id in 224 aa, and to Clostridium perfringens stage II sporulation protein R SpoIIR or cpe2211 SWALL:Q8XIB0 (EMBL:AP003193) (209 aa) fasta scores: E(): 1.5e-37,55.34 38d in 206 aa.
  
   
 0.697
spoIIIAG
Stage III sporulation protein AG.
  
     0.688
spoIIID
Similar to Bacillus subtilis stage III sporulation protein D SpoIIID or bsu36420 SWALL:SP3D_BACSU (SWALL:P15281) (93 aa) fasta scores: E(): 1.1e-16, 62.65 id in 83 aa, and to Clostridium acetobutylicum stage iii sporulation protein D SpoIIID cac2859 SWALL:Q97F82 (EMBL:AE007783) (84 aa) fasta scores: E(): 9e-24, 89.28 id in 84 aa.
  
     0.683
spoIIIAA
Stage III sporulation protein AA.
  
     0.638
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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