STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0165Conserved hypothetical protein; Similar to Clostridium tetani ATPase of the pp-loop superfamily ctc00320 SWALL:Q898W8 (EMBL:AE015937) (236 aa) fasta scores: E(): 5.2e-62, 64.4 38d in 236 aa; Belongs to the TtcA family. (240 aa)    
Predicted Functional Partners:
CBO0362
Similar to Clostridium tetani putative aminotransferase ctc01359 SWALL:Q895C0 (EMBL:AE015940) (440 aa) fasta scores: E(): 6.2e-91, 55.55 38d in 432 aa.
 
 
    0.902
yyaC
Conserved hypothetical protein; Similar to Clostridium acetobutylicum spore protease gpr related protein, yyac b.subtilis ortholog cac2857 SWALL:Q97F84 (EMBL:AE007783) (188 aa) fasta scores: E(): 4e-36, 59.06 38d in 171 aa.
       0.700
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
  
 0.552
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
    0.516
CBO2453
Radical SAM superfamily protein.
   
 
 0.412
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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