STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0176Aminopeptidase; Similar to Bacillus licheniformis leucine aminopeptidase precursor SWALL:Q93EJ5 (EMBL:AF358651) (449 aa) fasta scores: E(): 9.2e-10, 26.85 38d in 417 aa, and to Clostridium acetobutylicum protein containing aminopeptidase domain cac2843 SWALL:Q97F97 (EMBL:AE007782) (449 aa) fasta scores: E(): 9.1e-79, 48.59 38d in 428 aa. (454 aa)    
Predicted Functional Partners:
CBO0177
Putative RNA binding protein; Similar to Clostridium tetani transcription accessory protein ctc00330 SWALL:Q898V8 (EMBL:AE015937) (718 aa) fasta scores: E(): 7.4e-199, 77.99 38d in 718 aa.
  
    0.634
CBO3173
Putative TPR-family repetative protein.
  
    0.468
CBO2633
Putative membrane protein.
  
   
 0.460
CBO0413
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00544 SWALL:Q898B9 (EMBL:AE015937) (381 aa) fasta scores: E(): 8.2e-56, 44.75 38d in 362 aa.
  
     0.424
CBO3591
Putative alkaline serine protease.
  
  
 0.411
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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