STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO0179Putative riboflavin transporter; 5 probable transmembrane helices predicted for CBO0178 by TMHMM2.0 at aa 12-31, 41-63, 76-98, 108-130 and 163-185. (549 aa)    
Predicted Functional Partners:
CBO0180
Putative protein exporter; Similar to Bacillus subtilis YlqH protein ylqH SWALL:O34867 (EMBL:AJ000975) (93 aa) fasta scores: E(): 1.6e-07, 38.55 38d in 83 aa, and to Clostridium acetobutylicum flagellar biosynthesis related protein cac0639 SWALL:Q97LC3 (EMBL:AE007579) (90 aa) fasta scores: E(): 2.2e-17, 65 38d in 80 aa.
       0.812
CBO0181
Putative phosphoesterase; Similar to Clostridium perfringens hypothetical protein Cpe0653 cpe0653 SWALL:Q8XMN5 (EMBL:AP003187) (230 aa) fasta scores: E(): 3.1e-64, 67.54 38d in 228 aa.
       0.789
CBO0182
ArsR-family transcriptional regulator; Similar to Bacillus anthracis transcriptional repressor PagR or TcrA or Pxo1-109 SWALL:PAGR_BACAN (SWALL:O31178) (99 aa) fasta scores: E(): 8e-09, 41.37 38d in 87 aa, and to Bacillus cereus transcriptional regulator, ArsR family bc4256 SWALL:Q818J4 (EMBL:AE017011) (96 aa) fasta scores: E(): 4.6e-16, 63.09 38d in 84 aa.
       0.584
CBO0183
Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Fusobacterium nucleatum coenzyme a disulfide reductase/ disulfide bond regulator domain fn1903 SWALL:Q8RHU1 (EMBL:AE010492) (810 aa) fasta scores: E(): 1e-163, 56.35 38d in 818 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 coenzyme a disulfide reductase/ disulfide bond regulator domain fnv2089 SWALL:Q7P7P1 (EMBL:AABF01000012) (809 aa) fasta scores: E(): 2.7e-159, 55.5 38d in 818 aa; Belongs to the sulfur carrier protein TusA family.
       0.511
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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