STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0180Putative protein exporter; Similar to Bacillus subtilis YlqH protein ylqH SWALL:O34867 (EMBL:AJ000975) (93 aa) fasta scores: E(): 1.6e-07, 38.55 38d in 83 aa, and to Clostridium acetobutylicum flagellar biosynthesis related protein cac0639 SWALL:Q97LC3 (EMBL:AE007579) (90 aa) fasta scores: E(): 2.2e-17, 65 38d in 80 aa. (89 aa)    
Predicted Functional Partners:
CBO0181
Putative phosphoesterase; Similar to Clostridium perfringens hypothetical protein Cpe0653 cpe0653 SWALL:Q8XMN5 (EMBL:AP003187) (230 aa) fasta scores: E(): 3.1e-64, 67.54 38d in 228 aa.
  
    0.934
CBO0179
Putative riboflavin transporter; 5 probable transmembrane helices predicted for CBO0178 by TMHMM2.0 at aa 12-31, 41-63, 76-98, 108-130 and 163-185.
       0.860
flhA
Putative flagellar biosynthesis protein; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
  
 0.831
FlgG
Putative flagellar basal-body rod protein.
 
 
 0.823
FlgG-2
Putative flagellar basal-body rod protein.
 
 
 0.817
fliP
Putative flagellar biosynthetic protein; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
  
 0.795
flgC
Flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
 
     0.776
fliQ
Flagellar biosynthetic protein; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
    0.773
fliI
Flagellum-specific ATP synthase.
 
    0.771
fliG
Flagellar motor switch protein.
 
  
 0.752
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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