STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0184Conserved hypothetical protein; Similar to Clostridium acetobutylicum uncharacterized conserved protein cac0641 SWALL:Q97LC1 (EMBL:AE007579) (264 aa) fasta scores: E(): 2.5e-49,52.98 38d in 251 aa. (284 aa)    
Predicted Functional Partners:
CBO3506
Conserved hypothetical protein.
  
    0.695
cheX
Putative chemotaxis protein.
 
     0.693
CBO0185
Putative guanosine 3',5'-bis-pyrophosphate (ppGpp) synthesis/degradation protein; Similar to Clostridium tetani GTP pyrophosphokinase ctc00336 SWALL:Q898V3 (EMBL:AE015937) (262 aa) fasta scores: E(): 8.5e-70, 77.86 38d in 262 aa.
 
     0.689
CBO1430
Similarity to the Bacillus subtilis cell division protein FtsA is limited to the N-terminal region.
 
     0.661
CBO2642
Conserved hypothetical protein.
 
     0.572
CBO2753
Conserved hypothetical protein.
 
     0.563
CBO0112
Spore coat protein; Similar to Bacillus subtilis spore coat protein S CotS or bsu30900 SWALL:COTS_BACSU (SWALL:P46914) (351 aa) fasta scores: E(): 5.4e-11, 25.43 38d in 342 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2908 SWALL:Q97F45 (EMBL:AE007788) (344 aa) fasta scores: E(): 6.1e-61, 49.84 38d in 331 aa. Also similar to CBO0114 (32.390 38d), CBO0109 (32.537) and to CBO0111 (21.756).
  
     0.523
CBO0109
Spore coat protein; Similar to Bacillus subtilis spore coat protein S CotS or bsu30900 SWALL:COTS_BACSU (SWALL:P46914) (351 aa) fasta scores: E(): 4.6e-06, 19.63 38d in 331 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2910 SWALL:Q97F43 (EMBL:AE007788) (335 aa) fasta scores: E(): 3.8e-69, 52.25 38d in 333 aa.
  
     0.491
cotS
Spore coat protein S.
  
     0.483
CBO0114
Spore coat protein; Similar to Bacillus subtilis YtaA protein SWALL:O34656 (EMBL:Z99119) (357 aa) fasta scores: E(): 1.3e-20, 28.1 38d in 306 aa, and to Clostridium tetani spore coat protein ctc00273 SWALL:Q899B2 (EMBL:AE015936) (337 aa) fasta scores: E(): 8.4e-95, 71.85 38d in 334 aa. Also similar to CBO0112 (32.390 38d), CBO0109 (31.077).
  
     0.479
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.