Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0192Similar to Clostridium tetani conserved protein ctc00340 SWALL:Q898U9 (EMBL:AE015937) (366 aa) fasta scores: E(): 2e-83, 66.37 38d in 345 aa, and to Clostridium acetobutylicum hypothetical protein Cac0651 cac0651 SWALL:Q97LB1 (EMBL:AE007580) (345 aa) fasta scores: E(): 3.2e-82, 62.31 38d in 345 aa. (345 aa)    
Predicted Functional Partners:
CBO3625
Conserved hypothetical protein.
  
     0.759
CBO0082
Similar to Clostridium tetani conserved protein ctc00249 SWALL:Q899D4 (EMBL:AE015936) (438 aa) fasta scores: E(): 3.8e-27, 45.7 38d in 431 aa, and to Clostridium acetobutylicum hypothetical protein Cac2985 SWALL:Q97EX1 (EMBL:AE007795) (491 aa) fasta scores: E(): 5.8e-27, 40.65 38d in 487 aa.
  
     0.736
CBO0188
Putative membrane protein; Similar to Staphylococcus epidermidis cell shape determinant MreD se1331 SWALL:Q8CNZ6 (EMBL:AE016748) (173 aa) fasta scores: E(): 0.34, 22.36 38d in 161 aa, and to Clostridium tetani heptaprenyl diphosphate synthase component I ctc01025 SWALL:Q896H9 (EMBL:AE015939) (181 aa) fasta scores: E(): 0.13, 25.97 38d in 154 aa.
 
     0.688
CBO3436
TPR-repeat-containing protein.
  
     0.683
CBO0117
Putative peptidoglycan binding protein; Similar to Clostridium tetani conserved protein ctc00280 SWALL:Q899A5 (EMBL:AE015936) (520 aa) fasta scores: E(): 8e-105, 53.07 38d in 520 aa, and to Clostridium acetobutylicum lysm domain containing membrane protein cac2903 SWALL:Q97F50 (EMBL:AE007787) (520 aa) fasta scores: E(): 1.9e-86, 45.76 38d in 520 aa.
  
     0.681
CBO2657
Putative flagellar hook-length control protein.
  
     0.671
ytxC
Conserved hypothetical protein.
  
     0.667
CBO3314
Putative nuclease.
  
     0.661
CBO3113
Putative capsular polysaccharide biosynthesis TPR repeats containing protein.
  
     0.653
CBO0191
Putative adenylate cyclase; Similar to Clostridium acetobutylicum adenilate cyclase, class2 cac0650 SWALL:Q97LB2 (EMBL:AE007580) (180 aa) fasta scores: E(): 8.5e-37, 64.77 38d in 176 aa, and to Clostridium perfringens hypothetical protein Cpe1352 cpe1352 SWALL:Q8XKP2 (EMBL:AP003190) (187 aa) fasta scores: E(): 6.5e-36, 62.92 38d in 178 aa.
 
     0.647
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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