STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0195Putative membrane protein; Similar to Clostridium tetani conserved protein ctc00342 SWALL:Q898U7 (EMBL:AE015937) (225 aa) fasta scores: E(): 3.4e-51, 63.06 38d in 222 aa, and to Clostridium acetobutylicum ortholog yrbg, yete, ykja,ydfs, ydfr b.subtilis cac0671 SWALL:Q97L91 (EMBL:AE007582) (224 aa) fasta scores: E(): 1e-47, 58.82 38d in 221 aa. (222 aa)    
Predicted Functional Partners:
spoVAD
Stage V sporulation protein AD.
 
  
 0.627
spoVAC2
Stage V sporulation protein AC.
 
  
 0.607
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.602
spoVAC1
Stage V sporulation protein AC.
 
  
 0.568
CBO0194
Similar to Clostridium perfringens hypothetical protein Cpe1349 SWALL:Q8XKP5 (EMBL:AP003190) (144 aa) fasta scores: E(): 8e-10, 37.77 38d in 90 aa, and to Clostridium acetobutylicum hypothetical protein Cac0670 SWALL:Q97L92 (EMBL:AE007582) (126 aa) fasta scores: E(): 2.1e-07, 31.57 38d in 95 aa.
       0.567
CBO0196
Putative kinase; Similar to Clostridium tetani uridine kinase ctc00344 SWALL:Q898U6 (EMBL:AE015937) (552 aa) fasta scores: E(): 6.7e-122, 61.05 38d in 552 aa, and to Clostridium acetobutylicum fision threonyl-trna synthetase cac0672 SWALL:Q97L90 (EMBL:AE007582) (553 aa) fasta scores: E(): 4.3e-123, 61.84 38d in 553 aa.
       0.549
cotJC
Putative spore coat protein.
 
   
 0.534
CBO3432
Putative spore cortex-lytic enzyme; Similar to the C-terminal region of Bacillus cereus spore cortex-lytic enzyme precursor sleb or bc2753 SWALL:SLEB_BACCR (SWALL:P70874) (259 aa) fasta scores: E(): 2.1e-13, 42.52 38d in 127 aa.
  
     0.518
ytfJ
Conserved hypothetical protein.
  
     0.511
sigE
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.505
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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