STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0200Conserved hypothetical protein; Similar to Clostridium tetani BmrU protein or ctc00349 SWALL:Q898U2 (EMBL:AE015937) (315 aa) fasta scores: E(): 5.3e-81, 71.23 38d in 292 aa, and to Clostridium acetobutylicum unsharacterized protein, bmru family cac0679 SWALL:Q97L83 (EMBL:AE007583) (295 aa) fasta scores: E(): 1.2e-78, 68.83 38d in 292 aa. (294 aa)    
Predicted Functional Partners:
groEL
60 kDa chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
 0.770
CBO0199
Conserved hypothetical membrane; Similar to Clostridium acetobutylicum CBS domains cac0678 SWALL:Q97L84 (EMBL:AE007583) (142 aa) fasta scores: E(): 4e-24, 54.81 38d in 135 aa, and to Clostridium tetani inosine-5-monophosphate dehydrogenase related protein ctc00347 SWALL:Q898U3 (EMBL:AE015937) (143 aa) fasta scores: E(): 4.3e-25, 57.97 38d in 138 aa.
       0.729
CBO0201
Putative membrane protein; Similar to Clostridium acetobutylicum predicted membrane protein cac0680 SWALL:Q97L82 (EMBL:AE007583) (216 aa) fasta scores: E(): 2.9e-10, 27.06 38d in 218 aa.
       0.661
pssA
Similar to Bacillus subtilis CDP-diacylglycerol--serine O-phosphatidyltransferase PssA or Pss or bsu02270 SWALL:PSS_BACSU (SWALL:P39823) (177 aa) fasta scores: E(): 5.7e-17, 39.15 38d in 166 aa, and to Clostridium tetani CDP-diacylglycerol--serine O-phosphatidyltransferase ctc00346 SWALL:Q898U4 (EMBL:AE015937) (175 aa) fasta scores: E(): 3.4e-45,70.17 38d in 171 aa; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.638
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
    0.587
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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