STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0213Similar to Lactococcus lactis glutamyl-aminopeptidase PepA SWALL:PEPA_LACLC (SWALL:Q48677) (355 aa) fasta scores: E(): 4.4e-08, 23.21 id in 336 aa, and to Clostridium acetobutylicum endoglucanase, aminopeptidase m42 family cac0690 SWALL:Q97L72 (EMBL:AE007584) (343 aa) fasta scores: E(): 2.2e-89, 65.78 38d in 342 aa. (344 aa)    
Predicted Functional Partners:
cinA
Putative molybdopterin binding; Similar to Bacillus subtilis cina-like protein CinA or bsu16930 SWALL:CINA_BACSU (SWALL:P46323) (416 aa) fasta scores: E(): 6.2e-57, 44.92 38d in 394 aa, and to Clostridium acetobutylicum competence-damage inducible protein, cina cac3586 SWALL:Q97D94 (EMBL:AE007855) (411 aa) fasta scores: E(): 1.3e-92, 60.29 38d in 408 aa; Belongs to the CinA family.
  
    0.604
CBO0214
Putative exported protein; Similar to Clostridium acetobutylicum uncharacterized conserved protein, vanw of enterococcus faecalis related cac0691 SWALL:Q97L71 (EMBL:AE007584) (411 aa) fasta scores: E(): 4e-53, 44.75 38d in 362 aa, and to Clostridium tetani vancomycin b-type resistance protein vanw vanw or ctc00360 SWALL:Q898T2 (EMBL:AE015937) (467 aa) fasta scores: E(): 3.3e-61, 49.33 38d in 377 aa; Also similar to the downstream CDS, CBO0215 (48 id) and CBO0820 (45 38d).
       0.552
CBO0212
Putative exported protein; Similar to Clostridium acetobutylicum predicted hydrolase from alpha/beta family, yqkd b.subtilis ortholog cac2725 SWALL:Q97FL1 (EMBL:AE007770) (330 aa) fasta scores: E(): 1.2e-61, 50.31 38d in 318 aa.
  
    0.532
CBO2205
Acetyltransferase (GNAT) family protein.
 
    0.413
birA
BirA bifunctional protein [includes: biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.401
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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