STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0218Conserved hypothetical protein; Similar to Clostridium tetani degv protein degv or ctc00368 SWALL:Q898S4 (EMBL:AE015937) (280 aa) fasta scores: E(): 1.1e-66, 65.71 38d in 280 aa, and to Clostridium acetobutylicum hypothetical upf0230 protein Cac0701 SWALL:Y701_CLOAB (SWALL:Q97L61) (279 aa) fasta scores: E(): 5.9e-59, 60.21 38d in 279 aa. (279 aa)    
Predicted Functional Partners:
CBO2497
Putative phosphatase protein.
 
 0.977
trmL
Putative RNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
  
    0.770
CBO2498
Conserved hypothetical protein.
 
    0.702
CBO0829
Hypothetical protein; Similar to internal regions of several including Clostridium perfringens hypothetical protein Cpe1732 cpe1732 SWALL:Q8XJM4 (EMBL:AP003191) (548 aa) fasta scores: E(): 0.00013, 35.06 38d in 77 aa.
 
 
 0.596
splB
Similar to Bacillus subtilis spore photoproduct lyase SplB or Spl or bsu13930 SWALL:SPL_BACSU (SWALL:P37956) (342 aa) fasta scores: E(): 1.4e-52, 45.23 id in 336 aa, and to Clostridium acetobutylicum spore photoproduct lyase, SplB cac0699 SWALL:Q97L63 (EMBL:AE007585) (336 aa) fasta scores: E(): 4.5e-71,54.92 38d in 335 aa.
       0.480
CBO0219
Putative lipoprotein; Similar to Listeria monocytogenes cd4+ T cell-stimulating antigen precursor tcsa or lmo1388 SWALL:TCSA_LISMO (SWALL:Q48754) (357 aa) fasta scores: E(): 1.4e-30, 41.09 38d in 365 aa, and to Clostridium tetani membrane lipoprotein TmpC precursor TmpC or ctc00369 SWALL:Q898S3 (EMBL:AE015937) (359 aa) fasta scores: E(): 2e-65, 56.09 38d in 369 aa.
  
    0.443
CBO0215
Putative exported protein; Similar to Clostridium acetobutylicum uncharacterized conserved protein, vanw of enterococcus faecalis related cac0691 SWALL:Q97L71 (EMBL:AE007584) (411 aa) fasta scores: E(): 3.4e-55, 42.72 38d in 433 aa, and to Clostridium tetani vancomycin b-type resistance protein vanw vanw or ctc00360 SWALL:Q898T2 (EMBL:AE015937) (467 aa) fasta scores: E(): 7.3e-69, 45.59 38d in 454 aa; Also similar to the upstream CDS, CBO0214 (48 38d) and CBO0820 (47 38d).
 
     0.412
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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