STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0220ABC-transporter, ATP-binding protein; Similar to Clostridium acetobutylicum sugar ABC-transporter, ATP-ase component cac0703 SWALL:Q97L59 (EMBL:AE007585) (514 aa) fasta scores: E(): 1.5e-128,75.78 38d in 508 aa. (510 aa)    
Predicted Functional Partners:
CBO0221
Similar to Clostridium acetobutylicum sugar ABC transporter, permease protein cac0704 SWALL:Q97L58 (EMBL:AE007585) (365 aa) fasta scores: E(): 1.9e-88,64.94 38d in 368 aa; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
CBO0222
Similar to Clostridium acetobutylicum sugar ABC transporter, permease protein cac0705 SWALL:Q97L57 (EMBL:AE007585) (310 aa) fasta scores: E(): 5.9e-82,70.64 38d in 310 aa; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
CBO0219
Putative lipoprotein; Similar to Listeria monocytogenes cd4+ T cell-stimulating antigen precursor tcsa or lmo1388 SWALL:TCSA_LISMO (SWALL:Q48754) (357 aa) fasta scores: E(): 1.4e-30, 41.09 38d in 365 aa, and to Clostridium tetani membrane lipoprotein TmpC precursor TmpC or ctc00369 SWALL:Q898S3 (EMBL:AE015937) (359 aa) fasta scores: E(): 2e-65, 56.09 38d in 369 aa.
 
 
 0.995
CBO0223
Similar to Bacillus subtilis probable polysaccharide deacetylase PdaA precursor PdaA or bsu07980 SWALL:PDAA_BACSU (SWALL:O34928) (263 aa) fasta scores: E(): 1.1e-13, 34.95 38d in 206 aa, and to Clostridium perfringens probable endo-1,4-beta-xylanase cpe1477 SWALL:Q8XKC3 (EMBL:AP003190) (238 aa) fasta scores: E(): 8.6e-33, 44.58 38d in 240 aa.
       0.511
rpoN
Similar to Alcaligenes eutrophus RNA polymerase sigma-54 factor RpoN or NtrA or Hno SWALL:RP54_ALCEU (SWALL:P28615) (493 aa) fasta scores: E(): 6.6e-36, 33.6 id in 494 aa, and to Clostridium tetani RNA polymerase sigma-54 factor RpoN or ctc00376 SWALL:Q898R6 (EMBL:AE015937) (461 aa) fasta scores: E(): 2.6e-87,60.47 38d in 463 aa.
       0.447
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
  
 0.434
cinA
Putative molybdopterin binding; Similar to Bacillus subtilis cina-like protein CinA or bsu16930 SWALL:CINA_BACSU (SWALL:P46323) (416 aa) fasta scores: E(): 6.2e-57, 44.92 38d in 394 aa, and to Clostridium acetobutylicum competence-damage inducible protein, cina cac3586 SWALL:Q97D94 (EMBL:AE007855) (411 aa) fasta scores: E(): 1.3e-92, 60.29 38d in 408 aa; Belongs to the CinA family.
       0.410
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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