STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0237Similar to Streptomyces sp. JP95 putative fad-binding oxidoreductase Grho1 grho1 SWALL:Q8KSY2 (EMBL:AF509565) (467 aa) fasta scores: E(): 2.5e-25,30.81 38d in 464 aa, and to Bacillus cereus FAD-dependent oxidase bc0412 SWALL:Q81IH6 (EMBL:AE016999) (444 aa) fasta scores: E(): 5.9e-95, 52.16 38d in 439 aa. (443 aa)    
Predicted Functional Partners:
hymB
Putative electron-transferring subunit of iron-only hydrogenase.
   
 0.675
CBO0571
Conserved hypothetical protein.
  
     0.584
CBO0038
Conserved hypothetical protein; Similar to Clostridium acetobutylicum predicted enzyme with TIM-barrel fold cac0148 SWALL:Q97MP4 (EMBL:AE007526) (228 aa) fasta scores: E(): 1.9e-61,73.79 38d in 229 aa, and to Thermoanaerobacter tengcongensis hypothetical protein Tte2521 SWALL:Q8R798 (EMBL:AE013193) (227 aa) fasta scores: E(): 7.2e-52, 69.3 id in 215 aa.
  
 0.437
CBO3119
Putative FMN-dependent dehydrogenase.
  
 0.437
etfA2
Electron transfer flavoprotein alpha-subunit; N-terminal extension relative to homologues.
  
 
 0.413
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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