STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0249Two-component response regulator; Similar to Bacillus subtilis probable c4-dicarboxylate response regulator dctr dctr or bsu04460 SWALL:DCTR_BACSU (SWALL:P96602) (226 aa) fasta scores: E(): 1e-26, 40 38d in 220 aa. (224 aa)    
Predicted Functional Partners:
CBO0248
Two-component sensor kinase; Similar to Escherichia coli, and Escherichia coli O157:H7 sensor protein DcuS or b4125 or z5727 or ecs5107 SWALL:DCUS_ECOLI (SWALL:P39272) (543 aa) fasta scores: E(): 1.4e-44, 31.09 38d in 537 aa, and to Clostridium tetani sensor kinase DpiB or ctc01524 SWALL:Q894L7 (EMBL:AE015941) (538 aa) fasta scores: E(): 4.2e-67,41.17 38d in 544 aa.
 
 
 0.976
CBO1187
Two-component sensor histidine kinase.
  
 
 0.574
CBO2000
Methyl-accepting chemotaxis protein.
  
 
 0.536
CBO0614
Two-component sensor kinase.
  
 
 0.524
kdgT
Similar to Erwinia chrysanthemi 2-keto-3-deoxygluconate permease KdgT SWALL:KDGT_ERWCH (SWALL:P15701) (339 aa) fasta scores: E(): 2.4e-33, 38.43 id in 307 aa, and to Erwinia carotovora 2-keto-3-deoxygluconate permease KdgT SWALL:KDGT_ERWCA (SWALL:Q9XB52) (318 aa) fasta scores: E(): 3.1e-36, 41.29 id in 310 aa.
     
 0.505
CBO0250
Amino-acid permease; Similar to Bacillus subtilis amino-acid permease RocE or bsu40330 SWALL:ROCE_BACSU (SWALL:P39137) (467 aa) fasta scores: E(): 1.8e-73, 41.99 38d in 462 aa, and to Clostridium perfringens lysine specific permease cpe1166 SWALL:Q8XL76 (EMBL:AP003189) (489 aa) fasta scores: E(): 9.5e-137, 69.37 38d in 480 aa.
       0.422
CBO2284
Two-component sensor kinase.
 
     0.413
CBO0906
Two component sensor kinase.
 
   
 0.410
CBO0776
Two-component response regulator.
  
   
 0.407
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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