Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO0253Cytidine deaminase; Similar to Bacillus caldolyticus cytidine deaminase Cdd SWALL:Q9R2S1 (EMBL:AJ237979) (132 aa) fasta scores: E(): 1.2e-05, 30.4 38d in 125 aa, and to Aspergillus terreus blasticidin-S deaminase Bsd SWALL:BSD_ASPTE (SWALL:P78986) (130 aa) fasta scores: E(): 3.9e-05, 31.49 id in 127 aa. (125 aa)    
Predicted Functional Partners:
pdp
Pyrimidine-nucleoside phosphorylase.
  
 
 0.933
tdK
Thymidine kinase; Similar to Rhodothermus sp. thymidine kinase Tdk SWALL:KITH_RHOSI (SWALL:Q9ZIG2) (213 aa) fasta scores: E(): 2.6e-34, 53.26 38d in 184 aa, and to Clostridium acetobutylicum thymidine kinase cac2887 SWALL:Q97F65 (EMBL:AE007786) (195 aa) fasta scores: E(): 5.1e-56,77.48 38d in 191 aa.
    
 0.917
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 
0.913
CBO0196
Putative kinase; Similar to Clostridium tetani uridine kinase ctc00344 SWALL:Q898U6 (EMBL:AE015937) (552 aa) fasta scores: E(): 6.7e-122, 61.05 38d in 552 aa, and to Clostridium acetobutylicum fision threonyl-trna synthetase cac0672 SWALL:Q97L90 (EMBL:AE007582) (553 aa) fasta scores: E(): 4.3e-123, 61.84 38d in 553 aa.
    
 0.912
udk
Uridine kinase.
    
 0.912
surE
Acid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.903
CBO3181
Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
  0.900
CBO0252
Putative acetyltransferase; Similar to Clostridium acetobutylicum predicted acetyltransferase cac2751 SWALL:Q97FI6 (EMBL:AE007773) (167 aa) fasta scores: E(): 8.9e-07, 25.44 38d in 169 aa.
       0.689
CBO0254
Putative acetyltransferase; Similar to Listeria innocua hypothetical protein Lin2361 SWALL:Q929B6 (EMBL:AL596172) (291 aa) fasta scores: E(): 3.5e-39, 37.75 38d in 294 aa, and to Bacillus halodurans hypothetical protein Bh3929 bh3929 SWALL:Q9K606 (EMBL:AP001520) (286 aa) fasta scores: E(): 1.7e-23,30.47 38d in 292 aa.
 
     0.592
CBO0251
Putative metallo-beta-lactamase superfamily protein; Similar to Serratia fonticola beta-lactamase SfhI SWALL:Q9RMI1 (EMBL:AF197943) (234 aa) fasta scores: E(): 0.086, 25.4 38d in 248 aa, and to Aeromonas veronii metallo-B-lactamase ImiS SWALL:O31272 (EMBL:Y10415) (255 aa) fasta scores: E(): 0.45, 22.26 38d in 247 aa.
 
     0.584
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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