STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0255Putative reductase; Similar to Thermotoga maritima dihydrofolate reductase FolA or DyrA or tm1641 SWALL:DYR_THEMA (SWALL:Q60034) (169 aa) fasta scores: E(): 0.00064, 24.56 id in 171 aa, and to Bacillus cereus pyrimidine reductase bc0650 SWALL:Q813Y8 (EMBL:AE017000) (173 aa) fasta scores: E(): 1.8e-16, 37.19 38d in 164 aa. (174 aa)    
Predicted Functional Partners:
CBO0286
Similar to Chromobacterium violaceum hypothetical protein cv0714 SWALL:AAQ58390 (EMBL:AE016912) (212 aa) fasta scores: E(): 5.1e-27, 45.07 38d in 213 aa.
 
    0.700
CBO0254
Putative acetyltransferase; Similar to Listeria innocua hypothetical protein Lin2361 SWALL:Q929B6 (EMBL:AL596172) (291 aa) fasta scores: E(): 3.5e-39, 37.75 38d in 294 aa, and to Bacillus halodurans hypothetical protein Bh3929 bh3929 SWALL:Q9K606 (EMBL:AP001520) (286 aa) fasta scores: E(): 1.7e-23,30.47 38d in 292 aa.
       0.696
CBO0768
Putative phage-related deoxyuridylate hydroxymethyltransferase.
  
  
 0.658
CBO2205
Acetyltransferase (GNAT) family protein.
  
    0.654
CBO0256
Putative exonuclease; Similar to Clostridium acetobutylicum DNA polymerase III epsilon subunit cac0738 SWALL:Q97L28 (EMBL:AE007589) (306 aa) fasta scores: E(): 7.7e-76,68.75 38d in 304 aa.
 
     0.640
sigA
RNA polymerase sigma factor (sigma-43); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
  
 0.622
bdh
NADH-dependent butanol dehydrogenase.
  
    0.591
CBO3541
Probable serine protease.
   
    0.588
arcA1
Arginine deiminase; Similar to Enterococcus faecalis arginine deiminase ArcA or ef0104 SWALL:Q93K67 (EMBL:AJ312276) (408 aa) fasta scores: E(): 1.6e-80, 55.06 38d in 405 aa, and to Bacillus licheniformis arginine deiminase ArcA SWALL:ARCA_BACLI (SWALL:O86131) (413 aa) fasta scores: E(): 3.7e-77, 51.22 id in 408 aa; Also similar to CBO1587 (57.03 38d).
   
    0.584
arcA2
Arginine deiminase; Also similar to CBO0065 (57.03 38d).
   
    0.584
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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