STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xdhC1Similar to Escherichia coli xanthine dehydrogenase iron-sulfur binding subunit xdhc or b2868 SWALL:XDHC_ECOLI (SWALL:Q46801) (159 aa) fasta scores: E(): 1.2e-15, 39.61 id in 154 aa, and to Clostridium tetani carbon monoxide dehydrogenase, small subunit ctc02474 SWALL:Q891A6 (EMBL:AE015944) (158 aa) fasta scores: E(): 4.4e-39, 62.5 id in 152 aa. (157 aa)    
Predicted Functional Partners:
xdhA1
Similar to Escherichia coli xanthine dehydrogenase,molybdenum binding subunit XdhA or b2866 SWALL:XDHA_ECOLI (SWALL:Q46799) (752 aa) fasta scores: E(): 6e-37, 29.35 id in 780 aa, and to Bacillus halodurans hypothetical protein Bh1977 SWALL:Q9KBF1 (EMBL:AP001513) (1054 aa) fasta scores: E(): 1.7e-176, 59.58 38d in 767 aa.
 0.998
xdhB2-2
Xanthine dehydrogenase, FAD-binding subunit.
 0.997
xdhA2
Xanthine dehydrogenase, molybdenum binding subunit.
 0.995
CBO2852
Putative dehydrogenase, molybdenum binding subunit.
 
 0.991
xdhB2
Similar to Escherichia coli xanthine dehydrogenase,FAD binding subunit XdhB or b2867 SWALL:XDHB_ECOLI (SWALL:Q46800) (292 aa) fasta scores: E(): 0.00013, 22.06 id in 281 aa, and to Bacillus cereus xanthine dehydrogenase fad-binding subunit bc3167 SWALL:Q81BJ0 (EMBL:AE017008) (279 aa) fasta scores: E(): 6.2e-54,52.89 38d in 276 aa.
 
 0.986
CBO2851
Putative dehydrogenase, FAD binding subunit.
 
 
 0.871
xdhAC
In Escherichia coli the molybdenum binding and iron-sulfur binding domains of xanthine dehydrogenase are carried on two separate genes, wheareas in this case they are present on a single gene.
 
0.842
CBO2893
Putative xanthine dehydrogenase accessory protein.
 
  
 0.827
mocA
Conserved hypothetical protein.
 
  
 0.791
CBO2849
Conserved hypothetical protein.
 
  
 0.746
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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