Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0273Similar to Clostridium tetani two-component sensor histidine kinase ctc00393 SWALL:Q898Q0 (EMBL:AE015937) (352 aa) fasta scores: E(): 9.2e-107, 85.22 38d in 352 aa. (352 aa)    
Predicted Functional Partners:
CBO0272
Similar to Clostridium tetani two-component response regulator ctc00392 SWALL:Q898Q1 (EMBL:AE015937) (231 aa) fasta scores: E(): 1.4e-78, 90.47 38d in 231 aa.
 
 
 0.962
CBO0275
Similar to Clostridium tetani ABC transporter permease protein ctc00396 SWALL:Q898P8 (EMBL:AE015937) (655 aa) fasta scores: E(): 5.2e-203, 90.24 38d in 656 aa.
 
 
 
 0.890
CBO0274
Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00394 SWALL:Q898P9 (EMBL:AE015937) (256 aa) fasta scores: E(): 1.2e-81, 95.31 38d in 256 aa.
 
 
 0.877
CBO1394
Two-component response regulator.
 
 
 0.842
CBO0318
Similar to Bacillus cereus two-component response regulator bc4835 SWALL:Q816J5 (EMBL:AE017013) (231 aa) fasta scores: E(): 7.7e-51, 60.08 38d in 228 aa.
 
 
 0.841
CBO2136
Two-component system response regulator.
 
 
 0.820
CBO2146
ABC transporter, permease protein; CDS overlaps 20 nt at the N-terminus with CBO2147.
 
 
 
 0.811
CBO2140
Putative ABC transporter, permease protein.
 
 
 
 0.809
CBO1397
Putative ABC transporter, permease protein.
 
 
 
 0.778
CBO0322
Similar to Bacillus cereus ABC transporter permease protein bc1995 SWALL:Q81EI1 (EMBL:AE017004) (626 aa) fasta scores: E(): 2e-63, 34.07 38d in 628 aa.
 
 
 
 0.774
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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