Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0281Conserved hypothetical protein; Similar to the C-terminal region of Clostridium acetobutylicum hypothetical protein Cac0806 SWALL:Q97KW0 (EMBL:AE007596) (209 aa) fasta scores: E(): 2.3e-07,51.56 38d in 64 aa. (60 aa)    
Predicted Functional Partners:
cspA
Cold shock protein; Similar to Lactobacillus plantarum cold shock protein 2 CspL or Lp_0031 SWALL:CSP2_LACPL (SWALL:P96349) (66 aa) fasta scores: E(): 3.8e-15, 68.85 38d in 61 aa; Also similar to CBO1387 (63.9 38d.) and CBO1772 (49. 38d.).
       0.436
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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