Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0283Putative membrane protein; Similar to Enterococcus faecalis hypothetical protein ef0747 SWALL:Q837T3 (EMBL:AE016949) (236 aa) fasta scores: E(): 4.1e-24, 45.81 38d in 179 aa, and to Agrobacterium tumefaciens hypothetical protein atu1659 atu1659 or agr_c_3054 SWALL:Q8UEU5 (EMBL:AE009122) (217 aa) fasta scores: E(): 1.1e-21, 55.03 38d in 129 aa. (184 aa)    
Predicted Functional Partners:
CBO0299
Putative dolichyl-phosphate-mannose-protein mannosyltransferase; Similar to Streptomyces carzinostaticus subsp. neocarzinostaticus membrane protein SWALL:Q84HC4 (EMBL:AY117439) (720 aa) fasta scores: E(): 2.4e-25,27.37 38d in 767 aa.
  
     0.488
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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