Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0286Similar to Chromobacterium violaceum hypothetical protein cv0714 SWALL:AAQ58390 (EMBL:AE016912) (212 aa) fasta scores: E(): 5.1e-27, 45.07 38d in 213 aa. (212 aa)    
Predicted Functional Partners:
CBO0284
Rrf2-family transcriptional regulator; Similar to Bacillus anthracis rrf2 family protein ba4743 SWALL:Q81L85 (EMBL:AE017038) (143 aa) fasta scores: E(): 2e-33, 65.03 38d in 143 aa.
 
  
 0.915
CBO0285
Putative isomerase; Similar to Pseudomonas putida 2-hydroxychromene-2-carboxylate isomerase NahD SWALL:NAHD_PSEPU (SWALL:Q51948) (203 aa) fasta scores: E(): 0.00039, 24 38d in 200 aa, and to Burkholderia sp. DBT1 DbtD SWALL:Q93NA9 (EMBL:AF380367) (207 aa) fasta scores: E(): 1.9e-07, 25.37 38d in 201 aa.
  
    0.799
dkgA
2,5-diketo-D-gluconic acid reductase.
 
  
 0.498
flgC
Flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.468
CBO2204
Conserved hypothetical protein.
  
  
 0.426
nnrE
Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...]
       0.410
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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