STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kdgKSimilar to Escherichia coli 2-dehydro-3-deoxygluconokinase KdgK or b3526 SWALL:KDGK_ECOLI (SWALL:P37647) (309 aa) fasta scores: E(): 2e-08, 26.46 38d in 291 aa. (334 aa)    
Predicted Functional Partners:
kdgA
Similar to Bacillus subtilis khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase KdgA or bsu22100 SWALL:ALKH_BACSU (SWALL:P50846) (196 aa) fasta scores: E(): 4.1e-17, 35.6 38d in 191 aa, and to Streptococcus agalactiae 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase eda-2 or sag1907 SWALL:Q8DXE4 (EMBL:AE014277) (212 aa) fasta scores: E(): 1.6e-39, 54.76 38d in 210 aa.
 
 
 0.999
rpe
Putative ribulose-phosphate 3-epimerase; Similar to the C-terminal region of Solanum tuberosum ribulose-phosphate 3-epimerase, chloroplast precursor SWALL:RPE_SOLTU (SWALL:Q43843) (280 aa) fasta scores: E(): 1.7e-34, 51.4 38d in 214 aa.
  
 0.854
CBO0291
Probable dehydratase; Similar to Escherichia coli, and Escherichia coli O157:H7 phosphogluconate dehydratase edd or b1851 or z2903 or ecs2561 SWALL:EDD_ECOLI (SWALL:P25530) (603 aa) fasta scores: E(): 5.8e-37, 31.08 38d in 505 aa, and to Clostridium acetobutylicum dihydroxyacid dehydratase cac3604 SWALL:Q97D76 (EMBL:AE007856) (572 aa) fasta scores: E(): 1.4e-145, 63.79 38d in 569 aa; Belongs to the IlvD/Edd family.
 
  
 0.775
cinA
Putative molybdopterin binding; Similar to Bacillus subtilis cina-like protein CinA or bsu16930 SWALL:CINA_BACSU (SWALL:P46323) (416 aa) fasta scores: E(): 6.2e-57, 44.92 38d in 394 aa, and to Clostridium acetobutylicum competence-damage inducible protein, cina cac3586 SWALL:Q97D94 (EMBL:AE007855) (411 aa) fasta scores: E(): 1.3e-92, 60.29 38d in 408 aa; Belongs to the CinA family.
     
 0.731
CBO3083
Penicillin-binding protein.
     
 0.700
CBO1199
Putative membrane protein; Similar to the C-terminal region of several transporters.
 
  
 0.641
hisA
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase.
  
    0.606
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.512
ccpA
LacI-family transcriptional regulator (catabolite control protein); Similar to Clostridium saccharobutylicum hth-type transcriptional regulator RegA or RepA SWALL:REGA_CLOSA (SWALL:Q45831) (332 aa) fasta scores: E(): 1.2e-72, 65.75 id in 330 aa, and to Bacillus megaterium glucose-resistance amylase regulator CcpA SWALL:CCPA_BACME (SWALL:P46828) (332 aa) fasta scores: E(): 3.2e-45, 44.61 id in 334 aa.
 
  
 0.508
CBO1601
Putative LacI-family transcriptional regulator.
 
  
 0.475
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.