STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0302Putative iron(III) transport system, permease protein; Similar to Bordetella avium BhuU bhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 1.2e-35,38.69 38d in 336 aa, and to Clostridium tetani iron(iii) dicitrate transport system permease protein fecd or ctc00961 SWALL:Q896N9 (EMBL:AE015939) (377 aa) fasta scores: E(): 9.5e-69, 53.93 38d in 343 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (372 aa)    
Predicted Functional Partners:
CBO0303
Putative iron(III) transport system, ATP-binding protein; Similar to Streptococcus agalactiae FhuC fhuC SWALL:Q8VQV6 (EMBL:AF452237) (264 aa) fasta scores: E(): 5.2e-26, 31.9 38d in 257 aa, and to Clostridium tetani putative hemin transport system ATP-binding protein fece fece or ctc00962 SWALL:Q896N8 (EMBL:AE015939) (252 aa) fasta scores: E(): 4.8e-47, 55.15 38d in 252 aa.
 
 
 0.976
CBO0301
Similar to Clostridium tetani putative iron(III) dicitrate-binding periplasmic protein ctc00960 SWALL:Q896P0 (EMBL:AE015939) (354 aa) fasta scores: E(): 4.9e-30, 32 38d in 350 aa.
 
 
 0.971
CBO2896
Iron compounds ABC transporter, ATP-binding protein.
 
 
 0.959
fecE
Putative iron(III) dicitrate ABC transporter,ATP-binding protein.
 
 
 0.900
CBO1339
Putative iron ABC transporter, ATP-binding protein.
 
 
 0.895
CBO1337
Putative iron ABC transporter, substrate-binding protein.
 
 
 0.887
CBO0974
Putative iron(III) dicitrate-binding protein.
 
 
 0.884
fhuC1
Similar to Bacillus subtilis ferrichrome transport ATP-binding protein FhuC or bsu33290 SWALL:FHUC_BACSU (SWALL:P49938) (269 aa) fasta scores: E(): 3.1e-60, 63.29 id in 267 aa.
 
 
 0.867
fhuC2
Ferrichrome transport ATP-binding protein.
 
 
 0.864
CBO2897
Iron compounds ABC transporter,substrate-binding protein.
 
 
 0.787
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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