STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0328Conserved hypothetical protein; Similar to the C-terminal region of Clostridium acetobutylicum uncharacterized conserved protein cac3492 SWALL:Q97DI5 (EMBL:AE007846) (290 aa) fasta scores: E(): 3.4e-15, 41.04 38d in 134 aa. (150 aa)    
Predicted Functional Partners:
CBO0327
Radical SAM superfamily protein; Similar to Clostridium acetobutylicum uncharacterized conserved protein cac3492 SWALL:Q97DI5 (EMBL:AE007846) (290 aa) fasta scores: E(): 2.2e-20,54.63 38d in 108 aa.
     0.991
CBO0663
Conserved hypothetical protein.
  
     0.633
CBO0927
Putative iron-sulfur flavoprotein.
  
     0.583
CBO1527
MarR-family transcriptional regulator.
  
     0.579
CBO0716
Putative transcriptional regulator (partial); Partial CDS. Similar to the C-terminal region of Clostridium tetani putative transcriptional regulatory protein ctc01439 SWALL:Q894U5 (EMBL:AE015941) (235 aa) fasta scores: E(): 2.1e-12, 41.81 38d in 110 aa; was marked partial.
  
     0.563
CBO0664
Conserved hypothetical protein.
  
     0.541
CBO1027
Conserved hypothetical protein.
 
     0.519
CBO0329
Conserved hypothetical protein; Similar to Clostridium tetani ATP-dependent Zn protease ctc00401 SWALL:Q898P3 (EMBL:AE015937) (509 aa) fasta scores: E(): 1.3e-177, 88.84 38d in 502 aa; Belongs to the UPF0371 family.
       0.488
CBO0873
Conserved hypothetical protein.
 
     0.479
CBO1995
Conserved hypothetical protein.
  
     0.453
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.