STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0331Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d). (155 aa)    
Predicted Functional Partners:
CBO0332
Putative accessory gene regulator protein B; Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 1.3e-33, 44.39 38d in 214 aa.
 
   
 0.974
CBO0333
Putative signaling protein; Similar to Clostridium perfringens hypothetical protein Cpe1560 SWALL:Q8XK43 (EMBL:AP003191) (563 aa) fasta scores: E(): 3.2e-129, 61.02 38d in 567 aa.
 
     0.893
CBO0332A
Putative autoinducer prepeptide; No significant database matches.
       0.842
CBO0338
Putative accessory gene regulator protein B; Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 8.7e-24, 35.92 38d in 206 aa.
 
   
 0.837
CBO0330
Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1563 SWALL:Q8XK40 (EMBL:AP003191) (188 aa) fasta scores: E(): 3.1e-37, 53.4 38d in 176 aa.
     
 0.749
CBO2350
Phage capsid protein.
  
     0.646
CBO2336
Hypothetical phage protein.
  
     0.637
CBO2340
Hypothetical phage protein.
  
     0.631
CBO1606
Endonuclease/exonuclease/phosphatase family protein.
  
     0.623
CBO0901
Hypothetical protein; Similar to internal regions of several including Fusobacterium nucleatum subsp. vincentii ATCC 49256 acetyltransferase fnv1635 SWALL:EAA24765 (EMBL:AABF01000017) (173 aa) fasta scores: E(): 1.1e-07,46.15 38d in 65 aa.
  
     0.552
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.