Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0334Similar to Bacillus anthracis acetyltransferase,GnaT family ba3530 SWALL:Q81YL2 (EMBL:AE017035) (179 aa) fasta scores: E(): 3e-05, 25.94 38d in 158 aa. (169 aa)    
Predicted Functional Partners:
CBO3564
Conserved hypothetical protein.
  
     0.715
CBO1805
Putative acetyltransferase.
 
    0.600
CBO2075
Conserved hypothetical protein.
  
    0.589
CBO3325
Conserved hypothetical protein.
 
    0.569
CBO0064
Similar to Clostridium perfringens hypothetical protein Cpe0282 SWALL:Q8XNQ0 (EMBL:AP003186) (199 aa) fasta scores: E(): 9.2e-42, 63.59 38d in 195 aa, and to Clostridium acetobutylicum uncharacterized protein homolog ykrk b. subtilis cac0314 SWALL:Q97M84 (EMBL:AE007546) (197 aa) fasta scores: E(): 6.5e-41, 59.89 38d in 187 aa.
  
    0.533
CBO2868
Metallo-beta-lactamase superfamily protein.
  
     0.525
CBO3314
Putative nuclease.
  
     0.523
rnc
Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.518
CBO0354
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc01950 SWALL:Q892Y3 (EMBL:AE015942) (509 aa) fasta scores: E(): 4.1e-53, 35.15 38d in 512 aa.
  
     0.451
CBO3398
Putative exported protein.
  
     0.447
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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