Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0338Putative accessory gene regulator protein B; Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 8.7e-24, 35.92 38d in 206 aa. (209 aa)    
Predicted Functional Partners:
CBO1187
Two-component sensor histidine kinase.
 
  
  0.928
CBO0332
Putative accessory gene regulator protein B; Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 1.3e-33, 44.39 38d in 214 aa.
 
  
 
0.919
CBO0331
Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).
 
   
 0.815
CBO0337
Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 4.2e-18, 39.07 38d in 151 aa; Also similar to CBO0331 (42. 38d) and CBO0335 (33.1 38d).
     
 0.797
CBO0333
Putative signaling protein; Similar to Clostridium perfringens hypothetical protein Cpe1560 SWALL:Q8XK43 (EMBL:AP003191) (563 aa) fasta scores: E(): 3.2e-129, 61.02 38d in 567 aa.
 
     0.733
recJ
single-stranded-DNA-specific exonuclease.
      
 0.688
polC
DNA polymerase III PolC-type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
      
 0.681
xerD2
Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family.
      
 0.680
ftsK
DNA translocase FtsK.
      
 0.636
CBO0339
Putative autoinducer prepeptide; No significant database matches.
       0.563
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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