Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBO0344Similar to Clostridium perfringens probable proline dipeptidase cpe2497 SWALL:Q8XHI6 (EMBL:AP003194) (358 aa) fasta scores: E(): 1.7e-79, 56.11 38d in 360 aa. (360 aa)    
Predicted Functional Partners:
CBO0343
Putative amino acid permease; Similar to Clostridium perfringens membrane-spanning transporter protein cpe0166 SWALL:Q8XP02 (EMBL:AP003185) (495 aa) fasta scores: E(): 1.3e-43,30.62 38d in 480 aa.
 
  
  0.611
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
 
 0.577
CBO1014
Putative aromatic amino acid aminotransferase.
 
 
 0.543
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.522
nifJ2
Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).
     
 0.504
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
  
  
 0.503
ssnA
Putative amidohydrolase.
  
 
 0.498
asdA
L-aspartate beta-decarboxylase.
  
 
 0.476
CBO2015
Aspartate aminotransferase.
  
 
 0.476
lepB-2
Putative signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.472
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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