STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0348Similar to Clostridium acetobutylicum hypothetical protein Cac0449 SWALL:Q97LV5 (EMBL:AE007559) (156 aa) fasta scores: E(): 1.5e-29, 56.66 38d in 150 aa. (155 aa)    
Predicted Functional Partners:
yunB
Conserved hypothetical protein.
  
     0.713
CBO0034
Conserved hypothetical protein; Similar to Thermoanaerobacter tengcongensis hypothetical protein Tte0043 SWALL:Q8RDI2 (EMBL:AE012979) (90 aa) fasta scores: E(): 2e-05, 42.02 38d in 69 aa, and to Clostridium perfringens hypothetical protein Cpe0048 SWALL:Q8XPB7 (EMBL:AP003185) (92 aa) fasta scores: E(): 2.8e-05, 37.8 38d in 82 aa.
  
     0.687
CBO3396
Putative CopG-family transcriptional regulator.
  
     0.600
CBO1278
Conserved hypothetical protein.
  
     0.599
CBO0390
Putative forespore-specific lipoprotein; Similar to Bacillus subtilis lipoprotein yhcn precursor yhcn or bsu09150 SWALL:YHCN_BACSU (SWALL:P54598) (189 aa) fasta scores: E(): 2e-08, 27.89 38d in 190 aa.
  
     0.577
CBO0338
Putative accessory gene regulator protein B; Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 8.7e-24, 35.92 38d in 206 aa.
  
     0.555
CBO1315
Putative membrane protein.
 
     0.517
CBO3048
Small acid-soluble spore protein.
  
     0.504
CBO0098
Conserved hypothetical protein; Similar to Clostridium acetobutylicum Zn-dependent hydrolases of the metallo-beta-lactamase superfamily cac0482 SWALL:Q97LS2 (EMBL:AE007563) (211 aa) fasta scores: E(): 2e-35, 44.07 38d in 211 aa, and to Thermoanaerobacter tengcongensis predicted Zn-dependent hydrolases of the beta-lactamase fold tte2532 SWALL:Q8R787 (EMBL:AE013195) (212 aa) fasta scores: E(): 1.4e-31, 44.5 id in 200 aa.
   
    0.501
CBO0332
Putative accessory gene regulator protein B; Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 1.3e-33, 44.39 38d in 214 aa.
  
     0.494
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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