Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0356Putative membrane protein; Similar to Clostridium tetani membrane spanning protein ctc01769 SWALL:Q893P4 (EMBL:AE015942) (220 aa) fasta scores: E(): 4.7e-43, 51.61 38d in 217 aa. (224 aa)    
Predicted Functional Partners:
CBO0355
Conserved hypothetical protein; Similar to Clostridium tetani putative rRNA methylase ctc00455 SWALL:Q898J2 (EMBL:AE015937) (192 aa) fasta scores: E(): 1.4e-32, 54.64 38d in 183 aa.
       0.692
CBO0354
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc01950 SWALL:Q892Y3 (EMBL:AE015942) (509 aa) fasta scores: E(): 4.1e-53, 35.15 38d in 512 aa.
       0.570
CBO1107
Putative lipoprotein.
 
  
 0.567
CBO2613A
Hypothetical protein; N-terminus is similar to thye N-terminal region of Streptomyces coelicolor hypothetical protein SCO3464 or SCE46.21 SWALL:Q9RKG8 (EMBL:AL939116) (210 aa) fasta scores: E(): 1.1e-13, 30.92 38d in 194 aa.
 
     0.545
CBO2612
Putative iron-sulfur protein.
     0.490
CBO2614
Putative glycosyl transferase.
 
     0.485
CBO0353
Two-component sensor kinase; Similar to Clostridium tetani alkaline phosphatase synthesis sensor protein phor or ctc01951 SWALL:Q892Y2 (EMBL:AE015942) (471 aa) fasta scores: E(): 9.7e-94,56.86 38d in 459 aa.
       0.440
CBO0352
Two-component response regulator; Similar to Bacillus subtilis alkaline phosphatase synthesis transcriptional regulatory protein PhoP or bsu29110 SWALL:PHOP_BACSU (SWALL:P13792) (240 aa) fasta scores: E(): 1.6e-34, 46.72 38d in 229 aa.
       0.435
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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