STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnfAElectron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (192 aa)    
Predicted Functional Partners:
rnfB
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
 
 0.998
rnfD
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
 
 0.994
rnfG
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
 
 0.992
rnfC
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
 
 
 0.991
rnfE
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
 
0.987
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
  
 
 0.835
prdC1
Putative electron transferring subunit of proline reductase; Similar to the N-terminal region of Clostridium sticklandii electron transfer protein PrdC SWALL:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 6e-59, 47.13 id in 367 aa.
 
 
 0.833
prdC2
Putative electron transferring subunit of proline reductase; Similar to the N-terminal region of Clostridium sticklandii electron transfer protein PrdC SWALL:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 9.7e-61,48.77 38d in 367 aa.
 
 
 0.808
prdC4
Putative proline reductase (partial); Similar to the N-terminal region of Clostridium sticklandii proline reductase proprotein, two subunits PrdA SWALL:Q9Z4P6 (EMBL:AJ130879) (630 aa) fasta scores: E(): 1.9e-20, 53.47 38d in 144 aa. Possible gene remnant; was marked partial.
 
 
 0.805
prdC3
Putative proline reductase (partial); Similar to the N-terminal region of Clostridium sticklandii proline reductase proprotein, two subunits PrdA SWALL:Q9Z4P6 (EMBL:AJ130879) (630 aa) fasta scores: E(): 9.2e-15, 33.94 38d in 218 aa. Possible gene remnant; was marked partial.
 
 
 0.787
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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