STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO0397Putative metal dependent phosphohydrolase; Similar to Clostridium tetani conserved protein ctc00529 SWALL:Q898D3 (EMBL:AE015937) (357 aa) fasta scores: E(): 7.6e-85, 63.17 38d in 353 aa. (352 aa)    
Predicted Functional Partners:
CBO1213
Putative signaling protein.
 
 0.813
CBO0357
Putative signaling protein; Similar to Chromobacterium violaceum hypothetical protein cv0542 SWALL:AAQ58219 (EMBL:AE016911) (633 aa) fasta scores: E(): 2.3e-57, 35.07 38d in 536 aa.
 
 
 0.773
CBO1366
Putative signaling protein.
 
 
 0.723
CBO3361
Putative signaling protein.
 
 
 0.723
CBO0092
Similar to Clostridium tetani signaling protein ctc01837 SWALL:Q893I5 (EMBL:AE015942) (449 aa) fasta scores: E(): 1.8e-10, 26.93 38d in 427 aa, and to Shewanella oneidensis cyclic nucleotide phosphodiesterase,putative so3556 SWALL:Q8EBG2 (EMBL:AE015792) (420 aa) fasta scores: E(): 3.6e-15, 24.37 38d in 357 aa.
 
 
 0.717
CBO2007
Putative signaling protein.
 
 
 0.715
CBO0398
Putative membrane associated peptidase; Similar to Clostridium tetani conserved membrane protein ctc00530 SWALL:Q898D2 (EMBL:AE015937) (345 aa) fasta scores: E(): 3.5e-47, 48.22 38d in 338 aa.
  
    0.640
CBO0396
Putative exported protein; Similar to Clostridium acetobutylicum hypothetical protein Cac0952 SWALL:Q97KG7 (EMBL:AE007610) (114 aa) fasta scores: E(): 1.3e-08, 32.99 38d in 97 aa.
       0.564
CBO1295
Putative signaling protein.
 
   
 0.462
fliW
Putative flagella-related conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
  
    0.403
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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